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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015931176.1_cds_XP_016478025.1_69699
CDS Infomation

[gene=LOC107799427] [db_xref=GeneID:107799427] [protein=calcium permeable stress-gated cation channel 1-like] [protein_id=XP_016478025.1] [location=join(1340..1653,3120..3266,3642..3777,4616..4717,5731..5850,5975..6055,6413..6753,8810..9055,9516..9840,10510..10743,12037..12297)] [gbkey=CDS]
Sequence

ATGGCAACACTGGGAGATATAGGAGTTTCTGCAGCTATAAATATTCTCTCAGCATTTATC
TTCCTCTTGGCATTTGCAATTCTGCGGCTCCAACCACTCAACGATAGAGTGTACTTCCCA
AAATGGTATCTTAAGGGTTTGAGAAATAGTGTGACGCAGCCTGGTGCATTTGTCAAAAAA
ATTGTTAATTTGGATTGGAGGGCATATATAAGGTTTCTGAACTGGGTGCCGGATGCACTG
AAAATGCCTGAACTTGAGCTCATTGACCATGCAGGACTGGACTCTGCTGTTTATTTACGG
ATCTACTTGCTAGGGCTCAAAATTTTTATTCCTATTACATTACTTGCTTTTACTGTACTA
GTACCTGTTCATTGGACAAATAGCACTCTTAGAAAGTCCAGGTTTACTTACAGTGACGTT
GATAAGCTCTCCATTTCAAATGTTCCACTCGGATCACAAAGGTTTTGGACTCATATCATT
ATGGCCTATGCCATTACAGTTTGGACATGCTATGTCTTACAAAGGGAGTATGCAAAAGTT
GCAGCTATGAGGTTGCTGTTTCTTGCGTCTGAAAAACGTCGTCCTGATCAATTTACAGTC
CTTGTCAGAAACGTTCCACCTGACACTCATGAATCAGTCGGTGAATGTGTCGAGCACTTT
TTCCTGGTTAATCATACAGATCATTACCTCACACACCAGGTTGTTTACAACGCCAACAAA
CTAGCAAAATTGGTCAAGGAGAAGAAGAGTAAGCAAAATTGGCTTGACTATTACCAACTA
AAGTTTTCTAGAAATCAATCAAATCGGCCCATGATGAAGACTGGTTTTCTTGGGTTTTTT
GGAAATAAAGTGGATGCGATCGACTATCAGACTGCTGAAGTTGAAAGCTTATCGAAAGAG
ATAGCTGAAGAGAGAGAGCGGGTTAAAAATGACCCAAAATCTATCATGCCGGCGGCATTT
GTCTCGTTTAAAACACGGTGGGGTGCTGCTGTTTGTGCTCAAACTCAGCAGTCAAGAAAT
CCGACTTTGTGGTTAACTGAATGGGCTCCAGAGCCGCGTGATGTATATTGGAGAAACCTG
GCGATTCCCTATGTGTCTTTAACAATTAGGAGGCTCATAATTGGTGTTGCTTTCTTTTTC
CTCACATTCTTCTTCATGATTCCCATCACATTTGTCCAAACACTTGCAACTATTGAGGGG
ATTAGGAAAGTAGCGCCATTCCTAAAAGTTATCATTGACATACCTTTCATCAAGTCATTC
ATCCAAGGTTTTCTACCTGGGATTGCTTTGAAGATCTTTCTCATAGTTTTGCCGAGGATA
CTGATGCTGATGTCCAAATTTGAGGGCTGGGAAAGTATATCAGCTCTAGAAAGAAGATCT
GCATCTAAATACTATATCTTTAACTTTGTGAATGTCTTTCTTGGGAGCATAATTGCAGGA
GCTGCATTCGAACAGCTAAAAACTTTTCTTCATCAGTCAGCAAATGAAATTCCTAAAACA
ATTGGTGTTGCTATCCCAATGAAGGCAACTTTCTTCATAACTTACATAATGGTTGACGGA
TGGGCTGGTATTGCTGGAGAGATCTTAAGGCTGAAGCCACTAATAATCTTCCACTTGAAG
AACTTTTTCTTGGTCAAGACTGAAAATGATAGAAAGAAGGCAATGAATGCTGGAAGCCTT
GGTTTCAACACTGGAGAACCGCAGATACAATTATACTTCTTATTGGGCCTTGTCTATGCT
GTGGTCACGCCATTTCTGCTTCCTTTCATACTGGTGTTTTTTGGCCTGGCATTCATCGTG
TTCCGTCATCAGATTATAAATGTATACAATCAAAAGTATGAAAGTGGAGCAGCATTCTGG
CCAGATGTTCATGGACGTGTAATATTCGCTCTGGTCTTCTCTCAGTTATCTTTACTTGGG
TTGCTAAGTACAAAACATGCTGTTCAGTCAGCACCTTTCCTTATCGCCCTTCCAGTTCTG
ACCATCTCTTTTCACAAATTCTGTAAAGGACGTTATGAGCCAGCTTTCACCAGATATCCA
CTTCAGGAAGCGAGAAGGAAAGATACTTTAGAACGAGCAAAAGAGCCCAATCTTAACTTA
AAAGCGTACCTTCAAAATGCTTATTTGCACCCTGTTTTTAAAGGTGATGATGAAGATGAA
GATGAGGAGTTTGACGATAAGTTGGAGAGTAATGGAACCGTGCTGGTTCCAACGAAGCGC
CAGTCAAGAGAAAATACTCCAGCGCCCAGCAGAATGAGTGCCAACTCTTCTCCTTCACGT
CCTAATGTTATTGACCAGATACAATAA

Peptide Sequence

PEP ID

XP_016478025.1
PEP Infomation

PREDICTED: calcium permeable stress-gated cation channel 1-like [Nicotiana tabacum]
Sequence

MATLGDIGVSAAINILSAFIFLLAFAILRLQPLNDRVYFPKWYLKGLRNSVTQPGAFVKK
IVNLDWRAYIRFLNWVPDALKMPELELIDHAGLDSAVYLRIYLLGLKIFIPITLLAFTVL
VPVHWTNSTLRKSRFTYSDVDKLSISNVPLGSQRFWTHIIMAYAITVWTCYVLQREYAKV
AAMRLLFLASEKRRPDQFTVLVRNVPPDTHESVGECVEHFFLVNHTDHYLTHQVVYNANK
LAKLVKEKKSKQNWLDYYQLKFSRNQSNRPMMKTGFLGFFGNKVDAIDYQTAEVESLSKE
IAEERERVKNDPKSIMPAAFVSFKTRWGAAVCAQTQQSRNPTLWLTEWAPEPRDVYWRNL
AIPYVSLTIRRLIIGVAFFFLTFFFMIPITFVQTLATIEGIRKVAPFLKVIIDIPFIKSF
IQGFLPGIALKIFLIVLPRILMLMSKFEGWESISALERRSASKYYIFNFVNVFLGSIIAG
AAFEQLKTFLHQSANEIPKTIGVAIPMKATFFITYIMVDGWAGIAGEILRLKPLIIFHLK
NFFLVKTENDRKKAMNAGSLGFNTGEPQIQLYFLLGLVYAVVTPFLLPFILVFFGLAFIV
FRHQIINVYNQKYESGAAFWPDVHGRVIFALVFSQLSLLGLLSTKHAVQSAPFLIALPVL
TISFHKFCKGRYEPAFTRYPLQEARRKDTLERAKEPNLNLKAYLQNAYLHPVFKGDDEDE
DEEFDDKLESNGTVLVPTKRQSRENTPAPSRMSANSSPSRPNVIDQIQ

Transcript Sequence

Gene sequence data has not been registered.